PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007390-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 79aa    MW: 8980.1 Da    PI: 8.488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007390-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-111558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT++E +++  a + + ++   +W ++a+ +g g++ +++k ++
  WALNUT_00007390-RA 15 SWTPQENKKFESALAVHDKDtpdRWQKVAKAVG-GKSVEEVKRHY 58
                        7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2121166IPR017884SANT domain
SMARTSM007179.0E-91264IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-131468IPR009057Homeodomain-like
CDDcd001674.54E-81558No hitNo description
PfamPF002491.0E-91558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-61559IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLAFSK GCNSSWTPQE NKKFESALAV HDKDTPDRWQ KVAKAVGGKS VEEVKRHYEI  60
LIADVKEIES DRIPFPNYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-30679174RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383186.13e-40hypothetical protein POPTR_0005s12390g
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9MXN34e-40B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.11e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-33RAD-like 6